A multi-layered Bayesian network model for structured document retrieval

New standards in document representation, like for example SGML, XML, and MPEG-7, compel Information Retrieval to design and implement models and tools to index, retrieve and present documents according to the given document structure. The paper presents the design of an Information Retrieval system for multimedia structured documents, like for example journal articles, e-books, and MPEG-7 videos. The system is based on Bayesian Networks, since this class of mathematical models enable to represent and quantify the relations between the structural components of the document. Some preliminary results on the system implementation are also presented

Introduction to the special issue on teaching and learning in information retrieval

We present an overview of the special issue in this paper. The main objective is to provide information for lecturers on how to improve the student experience, using current knowledge in the field. To this end we present an overview of six papers covering areas as diverse as tools and methods used to support teaching and learning, pedagogical challenges in teaching mathematics for search, etc

Predicting IR Personalization Performance using Pre-retrieval Query Predictors

Personalization generally improves the performance of queries but in a few cases it may also harms it. If we are able to predict and therefore to disable personalization for those situations, the overall performance will be higher and users will be more satisfied with personalized systems. We use some state-of-the-art pre-retrieval query performance predictors and propose some others including the user profile information for the previous purpose. We study the correlations among these predictors and the difference between the personalized and the original queries. We also use classification and regression techniques to improve the results and finally reach a bit more than one third of the maximum ideal performance. We think this is a good starting point within this research line, which certainly needs more effort and improvements.This work has been supported by the Spanish Andalusian “Consejerı́a de Innovación, Ciencia y Empresa” postdoctoral phase of project P09-TIC-4526, the Spanish “Ministerio de Economı́a y Competitividad” projects TIN2013-42741-P and TIN2016-77902-C3-2-P, and the European Regional Development Fund (ERDF-FEDER)

Information retrieval and machine learning methods for academic expert finding

In the context of academic expert finding, this paper investigates and compares the performance of information retrieval (IR) and machine learning (ML) methods, including deep learning, to approach the problem of identifying academic figures who are experts in different domains when a potential user requests their expertise. IR-based methods construct multifaceted textual profiles for each expert by clustering information from their scientific publications. Several methods fully tailored for this problem are presented in this paper. In contrast, ML-based methods treat expert finding as a classification task, training automatic text classifiers using publications authored by experts. By comparing these approaches, we contribute to a deeper understanding of academic-expert-finding techniques and their applicability in knowledge discovery. These methods are tested with two large datasets from the biomedical field: PMSC-UGR and CORD-19. The results show how IR techniques were, in general, more robust with both datasets and more suitable than the ML-based ones, with some exceptions showing good performance.Agencia Estatal de Investigación | Ref. PID2019-106758GB-C31Agencia Estatal de Investigación | Ref. PID2020-113230RB-C22FEDER/Junta de Andalucía | Ref. A-TIC-146-UGR2

Mitochondrial physiology

As the knowledge base and importance of mitochondrial physiology to evolution, health and disease expands, the necessity for harmonizing the terminology concerning mitochondrial respiratory states and rates has become increasingly apparent. The chemiosmotic theory establishes the mechanism of energy transformation and coupling in oxidative phosphorylation. The unifying concept of the protonmotive force provides the framework for developing a consistent theoretical foundation of mitochondrial physiology and bioenergetics. We follow the latest SI guidelines and those of the International Union of Pure and Applied Chemistry (IUPAC) on terminology in physical chemistry, extended by considerations of open systems and thermodynamics of irreversible processes. The concept-driven constructive terminology incorporates the meaning of each quantity and aligns concepts and symbols with the nomenclature of classical bioenergetics. We endeavour to provide a balanced view of mitochondrial respiratory control and a critical discussion on reporting data of mitochondrial respiration in terms of metabolic flows and fluxes. Uniform standards for evaluation of respiratory states and rates will ultimately contribute to reproducibility between laboratories and thus support the development of data repositories of mitochondrial respiratory function in species, tissues, and cells. Clarity of concept and consistency of nomenclature facilitate effective transdisciplinary communication, education, and ultimately further discovery

Mitochondrial physiology

As the knowledge base and importance of mitochondrial physiology to evolution, health and disease expands, the necessity for harmonizing the terminology concerning mitochondrial respiratory states and rates has become increasingly apparent. The chemiosmotic theory establishes the mechanism of energy transformation and coupling in oxidative phosphorylation. The unifying concept of the protonmotive force provides the framework for developing a consistent theoretical foundation of mitochondrial physiology and bioenergetics. We follow the latest SI guidelines and those of the International Union of Pure and Applied Chemistry (IUPAC) on terminology in physical chemistry, extended by considerations of open systems and thermodynamics of irreversible processes. The concept-driven constructive terminology incorporates the meaning of each quantity and aligns concepts and symbols with the nomenclature of classical bioenergetics. We endeavour to provide a balanced view of mitochondrial respiratory control and a critical discussion on reporting data of mitochondrial respiration in terms of metabolic flows and fluxes. Uniform standards for evaluation of respiratory states and rates will ultimately contribute to reproducibility between laboratories and thus support the development of data repositories of mitochondrial respiratory function in species, tissues, and cells. Clarity of concept and consistency of nomenclature facilitate effective transdisciplinary communication, education, and ultimately further discovery